Category: English

Neuronvisio ModelDb plugged in released into the wild

We have just released Neuronvisio 0.7.0.

With this release it is possible to browse the models present on the ModelDb database, and have a look at the readme and at the properties of the Model.

Model Information and properties are presented in a quick way to the user

The Load Model button permits to download, extract, compile and load the model in one click. Sweet.

The other big things is that I didn’t write all this code, but actually 0.7.0 it’s the first release that features a contribution from another person (before was one man band!). Uri wrote the scraper for ModelDb and I’ve hooked it together in the GUI. We developed using the pull-request framework, which github makes very nice and clean.

If you’re interested in computational Neuroscience, and you are using NEURON, give Neuronvisio a go.

Impacts graph on Neuronvisio repo

Lately, github has rolled out a series of graphs to visualize the commit through the time.

An interesting one is the impact graph. This is when everything started

Neuronvisio_impact_start

Neuronvisio started as one man band project, actually as a spin-off of my PhD, when I realized that I was building something that was missing and that could be useful for other people as well. So I just detached the neuronvisio code in is own package, and released online. With time, Neuronvisio started to get some users, and people actually wrote enthusiastically on the ML about it. I was proud. Last August/September Uri decided to contribute to the software, to increase the features of it, in particular to plug it with ModelDB, making easy to browse the database, and to download and load a model directly with one button. I helped on the GUI part, while he took care of the ModelDB representation.

This is the graph of his impact on the software, at later stage.

I really enjoyed the Pull request method, and I have to say that github made the collaboration very easy and nice.It was good fun and I’m looking forward to other contributions.

The new features are not yet released (we’ll do in a bit of time), however if you can’t wait, you can grab the code from github master and give it a go!

 

 

 

BRO11 – Burn Out and ride chronicles

After having promised it for a long time, I can finally tell a bunch of selected episodes of our BRO11.

The idea started long time ago (15 years, pretty much, when I’ve got my first two wheels machine), and it brew in my mind until the right conditions popped out.

So when Greg and Christine shown interested into the mad project to get some Harley and tour California, we actually got organized to do it. Organized it means we booked the bikes, and we got the flight from London to America! We finally set off for California, after I’ve managed to submit,  with the idea to start from San Francisco and hit the road for 9/10 days. We didn’t arrange anything before except the bike, but we had a map!

We ended up making more than 2000 miles..

It would take too long to tell you everything, so I’ll just tell you same selected stories…

Getting the bikes

We have booked our bikes in March, however when we arrived at the Eagle Rider shop in San Francisco, they actually told us they have got a trouble with the reservation, therefore they couldn’t give us the bikes we ordered. While there was no trouble for the Fat Boy (my ride), the two 883 which Christine and Greg chose were not available… but Free upgrade!

Greg got a Dyna Low Rider, which had the long range pedal (you were able to stretch your feet all the way, easy rider style), Christine got a Street Bob, a bad-ass ride, all black satin, a nice dark looking. The bikes were big, but not as big as the Fat boy, which was renamed Battleship Bob.

I’ve rode an Xt 600 for nearly 10 years right now, but I never jumped on a Harley. When the guy started the bike, the sound of the V-twin filled the air. It was a hell lot of noise. It sounded good, very good.

When all the bikes were out, we jumped on, put the first gear and started to ride. I was impressed. I always thought they were beautiful but bulky, but I have to say that I was wrong. The ability to turn and the smoothness of the ride was impressive. It was still considerable the amount of space needed to turn, but that’s America, and they are not short of space.

The first day we travelled around the North of San Francisco, to get known the bikes and get the feeling of the riding. It was very good.

The road which makes you

As I said, we didn’t have a plan. We did have a map. When the question come up: “Which way ?”  the answer was pretty easy: “South” – “Why?”‘ “‘Cause is down hill!”

So we started to go downhill, making the road as we went, following the advice of other bikers met on the road, or just coming up with a road instead of another just because it looked good on the map, and it was not a massive Freeway. We always find an accommodation for the night. A hostel in the vibrant town of Saint Luis Obispo, a super cheap motel with furniture from the 70s and which could be perfect for a Tarantino’s movie in Monterey, a travelodge in Eureka, Will’s base in San Francisco, and the duck-tape tent, which was hold together with duck tape everytime we were out in the wild, hitting a camping ground.

Racing the sun

When we left the Ocean and the Pacifica (the 1, this is a hell of a ride), we aim the mountains and the National Parks sitting over there. The plan was easy and not too complicated, however we didn’t think about one imortant detail…

A massive fields of farming area was placed in front of us, where the temperature was very high. To give you an idea, grab one massive hair-dryer and the point it on your face. Then select 60 miles per hour as speed. Hot air. Now, you can have an idea about the conditions of the riding.

At the end of this terrible stretch, we reached the National Park. The ranger at the entrance told us the first useful camping ground was at two hours riding, another one at 3 hours distance. The closest one was full, and the park operated a first come-first served policy, so there was no guarantee or way to actually know if there was a space, or if the space would be available when we reached the camping ground.

We decide to pursue it anyway. We stopped just after the entrance of the park, to get some water and grab some nuts as energy snacks. Then we jumped on the bikes, ready to ride.

The road turned to be super twisty as soon we set off, and our average decreased consistently to barely 20 miles. The condition of the road started also to deteriorate, due to same work in progress, with the result of loose gravel on the road.

You see, loose gravel is a dangerous thing with a motorbike, ’cause you’ve got to stay in the line cleaned by the cars’ tyres and not end up on the dirt, especially when you’re turning.

As soon we got accustomed with this driving, the sun started to settle down to get the another night rest. We were wearing the classic HD helmet, so no visor for us, except the sunglasses.

It was getting dark, and wearing sunglasses when is dark does not increase your vision. The race was set. Either the sun was going down, or we were going down. Bears are common neighbours in these areas, that’s way is warmly suggested to get a spot on a camping ground, instead to attempt some wild pitching in the park.

I was in front that time, and I decided it was time to hurry. The Fat Boy lamp was pretty big, although the darkness was advancing with fast pace, helped by the sunglasses. By the end, I was guessing where the was road, but slowing down was not an option, ’cause we needed to reach the camping ground, and fast. Christine was just beyond me and she was able to see my red light, assuming that the road should be at least close where I was with the bike. Greg was catching up from behind, seeing these two crazy red lights climbing the mountains like ants on crack, at full speed.

We outrun cars on a twisty mountain road wearing sunglasses. We hit the campsite, find a space, got some wood, open a bunch of beers, and light up a camp fire, enjoying the epic ride just happened.

It was epic. No bear visited us that night (although I’m not sure that there was none outside our tent).

Thank you

A big thanks to Will, which offer his house as base to start the trip. If you reading this, well, “there is a zombie on your lawn”, you know why.

Another big thanks to Steve and the guys at Lake Isabella, to offered us the space, the beer, the food and company for an amazing chat. We knew Californian people are cool, but you set the bar very high.

Last but not least, big thanks to all the bikers/people we met on the road who gave us hints and directions, tips and beers.

We come up with a video of the adventure, posted just down below with a bunch of picture, and even some road footage.

Keep riding!

Getting back to normal

fatboy and the road

Riding East during the BRO11 trip

I’ve been in California, and with a bunch of friends we have rode around the state for what was called BRO11 – Burn Out and Ride. We had a lot of fun and I will write more about this in a following post. If you are curious, that is a FatBoy, what I’ve rent, and we made more than 2000 miles. It was a very cool trip, indeed.

This is just a quick one to say that I’m back, up and running (kind of..) and on top of my Inbox (sort of..) 🙂

PJTwenty

To celebrate the 20 years of the Pearl Jam career, a documentary is being produced, together with a book.

I’ve got (two copies) of “Immagine in Cornice”, a documentary produced when the band made a tour in Italy (and I went to one of the concert!) It is awesome.

Immortality version from there

Therefore I can’t wait for this one!

This is the trailer!

Pearl Jam rocks!

And comes to a final stop

atlantis

Atlantis

The shuttle Atlantis has landed safely seven hours ago. The mission sts-135 was the last for the shuttle program. I have already wrote more about the closing down of the shuttle program on the last ride, therefore here I’ll just post this awesome video which Nature has put together, with all the shuttle missions.

after serving the world for 30 years, the space shuttle has found its place in History, and comes to a final stop.

sts-135 final mission, last words.

Est-ce que tu parles Français ?

Europe

Did you get it? Well if you speak French yes, otherwise it reads like “Do you speak French?”… Ok, big disclaimer, I don’t (yet) speak French! Please don’t reply in French, otherwise I’ll have either to harass my French labmates, or become a very close friend with Google translate.

My Citizenship is Italian, but first of all I feel European. Now, what a European citizen should do to make Europe a better connected place and more integrated?

I think, first is to understand each other. An more strong European idea among her citizen would be a good idea, and although these are tough times, I think its worth to re-raise, and try to re-state that is what we want (or at least, I want) as european citizen.

But “every big journey start with a single step”, and I embrace the “think global, act local” (put any other relevant favourite quote here), therefore I have decided to learn French.

Why? Well as I said it’s all about better understand each other and it’s time to give a little help and do something on this side.

Obviously everybody should start with what is possible for him/her. Consequently, for me, would be to try to learn a new European language, to increase the number of people which I could natively talk to, and understand better one more culture as well.

We really need to approach Europe as whole resource, using the strength of different cultures as resources and minimise the weaknesses.

First step is knowledge.

Change is what we need

Ikea paint brush

This blog started as an experiment in 2006. A lot of different contents, spawning from politics to environmental, to campaign, to tips and all the other things I thought/wanted to write are here. Now, I’ve decided it was time to change.

First, and my ‘affecionados’ reader would have notice, the visually appearance has been changed, using a new theme Matala. It was made available today also for the worpress.com hosted blog, I saw it, I liked and I’ve switched to it.

This was the old theme

old YANNB

old theme

Second change, I’ve decided to write from now on only in English on this blog. You can find all the Italian posts still hosted here using the category ‘Italian’ and only the English with ‘English’, however in the future only English will be used. This is to give the possibility to the people that follows to have a consistent feed, in one language only.

However, I like to write also in italian, and sometimes the topics apply only to italian speaking community, therefore I removed the dust from an old blog started even before this one, called Alago-Rets, where I will write exclusively in Italian. That one is a collaborative blog, so you will find my posts, but also posts from other authors.

The return to writing there was explained in this post (in italian).

BTW, thanks for stumbling upon these pages. Comments are open, as usual, if you have any

Enviromental accountability

I’ve just discovered the ICECoaltion,

A Coalition dedicated to creating the International Court for the Environment.

ICE Coalition gathers environmental, legal, business, academic and NGO representatives who believe the need to establish the rule of law and a new, workable global institution in the environmental field is urgent. Support is also sought from the general public, funding institutions and politicians. Public and private meetings throughout the world are to be convened by ICE Coalition, to inform the UN, governments and media worldwide.

and I think it’s a great idea.

We have one planet, and people should feel responsible for it, and it is possible only if a sense of ownership is instilled. On the other hand, accountability is a good start to make people understand that any action has consequences and therefore a clear judgement should be made.

The environment is a global issue, therefore we need a global coalition, and a global law, able to address the problem at super international scale.

Let’s see how it evolves, but at the moment I’m in complete agreement with the proposed solution.

via paul.